JaMBW Chapter 3.1.1

Window Composition


This program given a sequence of symbols runs a window of given size and computes the running average composition in the symbols given. Suggested patterns:
aimpatternsize
DNA, identify A/T reach regionsat5
DNA, identify C/G reach regionsct5
PROTEINS, identify basic regionskrh5
PROTEINS, identify acidic regionsandcqegpsy5
PROTEINS, identify hydrophilic regionsqnedbzhkr5
PROTEINS, identify hydrophobic regionslivmfyw5
PROTEINS, identify aromatic regionsfyw5
PROTEINS, identify neutral regionspagst5
PROTEINS, identify crosslink-forming regionsc5




This applet can be used for a variety of very useful tasks and its use is therefore highly stimulated.